So I’ve started using Wrye Bash profiles. I think I’m doing it right. It seems that the profile that’s active when Bash loads is the one whose mods are checked off in the mods tab. Then if I switch profiles I have to quit and restart WB to show the mods tab correctly for the different profile, though it seems that using the Skyrim launch button (or whatever it’s called) uses the newly active profile and loads the mods correctly.
Is there something I’m missing? Is there something I should know to definitely not do? My ideas are starting to get complicated, and I’m worried that I’ve already sown the seeds of destruction.

Also I’m afraid to run BOSS now since I don’t know what it will do. Sort only the active profile?