I will pass along the suggestion to create a single mods section. I was going to PM you that I moved your post, but got caught up in other things, and just forgot. I am sorry.
One problem with trying to remove things with the console in Fallout 4 is that the game is filled with triggers and fogs and special effects. They often prevent you from selecting objects, because you wind up selecting them instead without realizing it. Sometimes it can help to use the TCL command to become intangible. Then you can move right up onto (or even into) what you want to delete. Even then it still does not always work.
There used to be a mod called Better Console that would give you the name of everything you selected with the console. But sadly it used F4SE, and one of the game's updates made it stop working, and cause CTDs. I really miss that. Because with it you always knew what you were really clicking on.